Protein Info for Atu6072 in Agrobacterium fabrum C58

Annotation: thermophilic desulfurizing enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 PF02771: Acyl-CoA_dh_N" amino acids 28 to 104 (77 residues), 28.9 bits, see alignment E=1.3e-10 PF08028: Acyl-CoA_dh_2" amino acids 242 to 374 (133 residues), 43.8 bits, see alignment E=3e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu6072)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKY1 at UniProt or InterPro

Protein Sequence (404 amino acids)

>Atu6072 thermophilic desulfurizing enzyme (Agrobacterium fabrum C58)
MTHHPHTWPTIDTPAFRTLVAIFRPVFAEIAEGSRQRDATRTLPRDEVARLKALKFGALL
LPKDKGGLGATPLELLALLVELAEADSNVAQIFRAHFGLLGQLLDEPSNAWTRRCIDIIG
SGEIISAAATEVGNATLGKFSTSIIKTNEGHRLNGQKFYTTGALFSEWMTVSGLNNADEL
IIALIKTTAPGTSIVDDWNGFGQRLTASGTAVFDQVLLHDDDIAPSASRWPFLTAFAQLA
HLATLVGIGRGASTAVADYVRSRKRTYSHAAASTASDDPQVLQLVGKVFANAHGANSIVL
SAADAYHRAVAKGCRERTEIGKLEVQIYQAQVVVHQLILDATTVLFDGLGASALSNELGL
DRYWRNARAISSHNPVIYKERQIGDFAVNRSLPPDLWTTGIGKA