Protein Info for Atu6002 in Agrobacterium fabrum C58

Annotation: C protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 transmembrane" amino acids 193 to 216 (24 residues), see Phobius details amino acids 227 to 244 (18 residues), see Phobius details amino acids 250 to 274 (25 residues), see Phobius details amino acids 394 to 412 (19 residues), see Phobius details amino acids 418 to 435 (18 residues), see Phobius details amino acids 447 to 467 (21 residues), see Phobius details amino acids 480 to 502 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu6002)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL14 at UniProt or InterPro

Protein Sequence (523 amino acids)

>Atu6002 C protein (Agrobacterium fabrum C58)
MENQNTPVEAIERKLKSSWLHSLHVRKILPSPFLGGPYSYITEETDVGQEADCIRGHSVT
PLPEDEGMVSHHMQQIFCSTHQPAAHDHVDAFALRAAPEPAVIPDEDIADKSYRPFASSE
NSLTDILMRMPLSTRNAWATQARKERDDAFRVILELPSLPKEVKKYLRRSAQSIQTQEMR
WQLKCHLPLWERGLFWLWLVIMQLAVVLPDIVSASLGAEVAVLRSGPITLQTQLMVLAIF
DYPWADTRLAAHLACEVFLGGLPVLIFGLFAIAMPQHEGTTFHTAKDVAWKASLCILWQM
LMQNRKNIRDLLKYSFLRMKRISTAQSSDFTSEYTRLRNSSTIIYSWLDTFEVSNRLRIQ
IGYHKQDHEDALRVLRWVGHIADDNDRSPRGGKAGILVAILTMAGLICLSTFPTDAYSGL
IAAANLVPLAARAAVDVMDNSQSSHDLLRLFTATAGVSFPSTLFVLGNSSYWLLTKKSFL
AGFANIHFWIAFVLIFFLSLFPKLWGRLFMYVGSRLLNDRSRA