Protein Info for Atu5533 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 244 to 272 (29 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 324 to 345 (22 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 23 to 351 (329 residues), 398.9 bits, see alignment E=1.1e-123 PF02653: BPD_transp_2" amino acids 34 to 341 (308 residues), 131.3 bits, see alignment E=1.9e-42

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to atu:Atu5533)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL25 at UniProt or InterPro

Protein Sequence (379 amino acids)

>Atu5533 ABC transporter membrane spanning protein (Agrobacterium fabrum C58)
MSNERKFQIAAYVLFIAIIFAAPVFGDEFWLNRISKYLVYGMLGVAIALTWGYAGILNLG
QGLFFGLGAYMLAMSLKLSSLTSLQQGSDKPVPDFMLWNAEPGAPTELCCINKGSFLWLP
FQSQSVGLVLGVLLPVLIAGALGMLVFRKRISGVFVSIITLALVLLVRLVVVDAQPVTNG
FNGLTDLGWLMVGGIEFDPYSRATYYLCAACLSLTLIGARLVVETRAGMILQAIRDDQVR
ARYLGFDVSLYQVFFFVISAGIAGVAGMLYVVVAEFASPTFMDLSFSVTMVVWAAVGGRS
SLLGACIGAILINMIEAEVSETEALVEAWKAIIGLIFVLVVLFMPRGLGGVAHDVLRTFT
RRVKPAVAPSALQQQSEAL