Protein Info for Atu5428 in Agrobacterium fabrum C58

Annotation: DNA-damage-inducible protein F

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details amino acids 55 to 78 (24 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 246 to 263 (18 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 322 to 345 (24 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 393 to 412 (20 residues), see Phobius details amino acids 418 to 436 (19 residues), see Phobius details TIGR00797: MATE efflux family protein" amino acids 29 to 418 (390 residues), 185.4 bits, see alignment E=8.2e-59 PF01554: MatE" amino acids 29 to 188 (160 residues), 57.3 bits, see alignment E=8.2e-20 amino acids 267 to 400 (134 residues), 36.7 bits, see alignment E=1.8e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5428)

Predicted SEED Role

"DNA-damage-inducible protein F"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL78 at UniProt or InterPro

Protein Sequence (445 amino acids)

>Atu5428 DNA-damage-inducible protein F (Agrobacterium fabrum C58)
MKATAITGTEAAVRPFDVAHRDVLKIAIPMMIAYLSTPLVGLVATGVIAHMRNEALVGGV
ALASVIFDVIFVTFNFLRGATTGFTAQAMGAGDRVGEQRMLLSGLIIALVAGLLLLLLKG
PIGALGMSVMGADGIVAEVASTYFHWRIWSAPFVLFNFVAFGWLIGRGEAMWSMILQTLL
NGLNAALSVHWVIGLGWGVEGVAIATLVAEAVTAVAGAALILGKTDRSAWRLPDIPAIRR
SFEVNGDMMIRSFALLIGLSFFTRQSGFLGIEVLAANTILLRFYFFGVAFLDGVATAAEQ
LAGRAVGAHYRPAFDRTIKLTTLWGGIFAALVSLAFLAGGDWVIALTAPTDIVARLADSY
LIYVVVLPVIGIIAFQMDGVYIGSTWSRQMRNLMVVSLIIYFAAWAVLQPLYGNDGLWIS
LLLFQGARSIAFRLMLPRLAAATFR