Protein Info for Atu5424 in Agrobacterium fabrum C58

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 45 to 65 (21 residues), see Phobius details amino acids 102 to 118 (17 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 48 to 263 (216 residues), 42.7 bits, see alignment E=9.7e-15 PF13454: NAD_binding_9" amino acids 50 to 162 (113 residues), 31.8 bits, see alignment E=2.7e-11 PF13738: Pyr_redox_3" amino acids 50 to 264 (215 residues), 57 bits, see alignment E=4e-19 PF13434: Lys_Orn_oxgnase" amino acids 128 to 263 (136 residues), 39.4 bits, see alignment E=8.3e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5424)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL80 at UniProt or InterPro

Protein Sequence (492 amino acids)

>Atu5424 oxidoreductase (Agrobacterium fabrum C58)
MTLEQQDRTEQQLAALNAQVRQDLCYLNYPAANWSKPVSTSDGQLVSDVVIIGGGMCGLV
AWHALTRAGIANIRIVDRAAKGEEGPWVTYARMETLRSPKNLLGPALGMASLTFRAWYTA
RFGKEAWEELFRIPRPMWMEYLSWYRQVMEIPVENNIHVTRVIPRLDGLLELEIEGGKAD
PIITRKLVMATGRDGLGEPTIPDFVKGMPRHVSWAHSADMIDFQRLKGKRVVVIGVGASA
VDNAAEALEQGAGEVRLLARRKTMPTINKLMGIGSYGVTAGFAKIDPEWRWRLMDYSVKQ
QTPAPHNSTLRVSRHSNAYFHFDCGIQSMKEEGGEVVITTINGRVFRTDFVILGTGFSID
PVSRPELEMFNGQIACWEDRYTPPAGEENPGLGRFPWLQDDFSFTEKEPGAAPWLQHIHC
FNYGSSVSLGKVSGDIPAISEGALWLARGIAASLFIADIDHHWEALKAYEKPELDGSEWT
DADADPSMQKTA