Protein Info for Atu5395 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 transmembrane" amino acids 36 to 62 (27 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 161 to 183 (23 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 274 to 297 (24 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 404 to 422 (19 residues), see Phobius details amino acids 428 to 449 (22 residues), see Phobius details PF07690: MFS_1" amino acids 43 to 382 (340 residues), 148 bits, see alignment E=3.4e-47 amino acids 317 to 452 (136 residues), 44.7 bits, see alignment E=8.7e-16 PF00083: Sugar_tr" amino acids 69 to 459 (391 residues), 170 bits, see alignment E=8.9e-54

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 100% identity to atu:Atu5395)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CL96 at UniProt or InterPro

Protein Sequence (461 amino acids)

>Atu5395 MFS permease (Agrobacterium fabrum C58)
MNIMQPLRADATAVADPQADISARLERLPITREVFWARNIVGAATFFDGYTVIAIAYAMP
VLVREWGLTPSQTGMILSMGYLGQLIGAILFGWLAERIGRLKVLLFTILLFVSMDVACLF
AAGAGMMMAFRFVQGIGTGGEVPVASAYINELIGSKGRGRFFLLYEVMFLLGLVGAGLIG
YFMVPLYGWKAMFIVGLVPAMLMIPLRWFLKESPRWLAATGRYDEANVIVKRMEESARAA
GKALPEPRIIATPAKRVSDWRELFQGIYLKRTLSIWAMWFCAYMVANGTITWLPTLYRQT
FNLPLETSILYGFMTSAAGVVAAVICALLIDKVGRKRWYAGALLLAPVPLAILAWLGATS
PMQVLIFAGLAYAIVQTVTFSLYLYSAEIYPTRMRAIGTGAGSAWLRLGSSAGPMLVGFV
MSSMGIQYVFATFAFILIIGAVVTMLFAVETKGKVLEELSP