Protein Info for Atu5384 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 transmembrane" amino acids 418 to 435 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5384)

Predicted SEED Role

"FIG01007044: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLA3 at UniProt or InterPro

Protein Sequence (787 amino acids)

>Atu5384 hypothetical protein (Agrobacterium fabrum C58)
MSMTKHDLSSRHFQRKISEFCELRIAPITSRRALENIRPFLISLIIYRESPPLLNGHIDW
TMISQACGIEAELTAELKKQLRPGLDAIIRWLGVPPAAEERRAPKSTVSSSKMAPARKAA
SASSTRKPQCAATDGAFTRSASTQRGPASKPISPFPQALFEATEDPASFQDALVYHMRRF
GDTYWQLYRAVVHLNETFDNKTLLSWIQGERVPRSVASFNILRRIERRYQLAEGYFKEKL
PHQARSLYGHELGDISPAERRRISLHLPEDFNSLPFTKREEILDWVRRVIISGSTEYRRY
QAAASKQRYAIRFPGVTYGSSFLSSRSVAAAAGANQNVAAEIVDPDLLSGVVDAPPRLAM
EMADLIRFKTSTLTAIGFQRNGVWGEETASQKIEHLGLMFGALAASPNGVVKGFGVPVSQ
LSFGLLIFPGVWDWYLQWREQRRGFYTKWEEDMLMVAQALTRAEVGWIRQHPELLQNVRP
ITGLIEQEEIEFAARDWHGACDAFHRHAANRSKEIQRVMRVHRDPFEPIMCVLEADSPLA
EYRKITDEIVKRMPDENRYPRPAAEAVRSFLLLRLGLHLGLRQKNLRQLRLCPRGHHPTS
ERRLEDMKCGELRWSDRDNGWEVLIPAAAFKNSSSSFFGQKPFRLILPDLLELYQYLDAY
IDRHRGVLLGGAKDPHTLFVKTVKTTSTDAAYNSTTFYEAWRTVIQRYGIYNPYTGRGAI
KDLLPHGPHNLRDILATHILKQTGSYEQASYAIQDTPDVVQQHYGRFLPQDKAALAAKIL
NQVWEAA