Protein Info for Atu5381 in Agrobacterium fabrum C58

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 transmembrane" amino acids 27 to 48 (22 residues), see Phobius details amino acids 350 to 368 (19 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details amino acids 401 to 421 (21 residues), see Phobius details amino acids 441 to 466 (26 residues), see Phobius details amino acids 476 to 499 (24 residues), see Phobius details amino acids 537 to 557 (21 residues), see Phobius details amino acids 870 to 889 (20 residues), see Phobius details amino acids 896 to 916 (21 residues), see Phobius details amino acids 920 to 936 (17 residues), see Phobius details amino acids 971 to 990 (20 residues), see Phobius details amino acids 996 to 1020 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 19 to 1020 (1002 residues), 557.7 bits, see alignment E=2.4e-171

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5381)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLA5 at UniProt or InterPro

Protein Sequence (1052 amino acids)

>Atu5381 AcrB/AcrD/AcrF family protein (Agrobacterium fabrum C58)
MTWHNAPSSTEEKHKFNLSRWAISHPSIARFLFGLIIVMGALGVINMGQKEDPDFTFRVM
VVQSVWPGASIDDMQNQVVNKIERKLQETPHLDWVKSYIRAGVAITTIQIKGDTNGADVA
DAFYQVRKKVGDIKQDLPSGLLGPYFNDEFGDTYITLHAISGDGYSYPELKKFAIQARDM
LIAMPGVEKAVILGDQPQKIFIDVSSKALAERGLTVVDIQNALQGQNDVDPAGSVETADR
SVRISVEGDVTTPAEIRELRLKAGDQVIRLGDIATVRDGLEDPFQRKFRVNGHDTVELGV
VMAKGFKVTDVGKGIEETYKRFEDTLPVGVEVTQISNQPEVVTEAVGEFTQALMEALGIV
LIVSLISIGWRSGIVIAVAIPLVLAATLAIMFYMGIELQRISLGALIIALGLLVDDAMIV
VEMMERKLEEGLNRLDAASFAYSSTAFPMLTGTLITTAGFIPVGFAASTAGEYVRSLFFV
VGIALVTSWFVAVYFTPWLGYMILKQRAHAGTHHDAYDTRFYRGVGHTVGWAVRHKAIVL
LLTLGAFVGSLWSFQFIPQSFFPQSSRPEILVDMWLPEGTAIKEVERQAKALEAKIMDDP
DKKFVATFIGEGAPRFFLPLDQQLRNPNYAQLLVMSNGLEERERMIVKLRKILAEDFPTV
RGKVDRLFLGPPVGWAVQMRVVGPDRAEVRSIADQVKQRFEQQPNFGAVHDDWMEPVPAM
KLVIDQDRARALGVSSQRVRQILQAATNGAAISDFRDGEETVSIVVREPDATRSLLSAVN
SVYIPTDIGGFVPASQIARVVPLLEQGIEWRRDRLPTITVKATLPDGVEPTQVTMNLYNS
MADLRAKLPAGYKVEIQGGAEDAAESQQSIAAKAPIMLLVILVLLMIQLQHFGKAMLVLA
TGPLGIIGAAMALLITGAPFGFVAILGVIALLGIIMRNSIILVDQIDQDIAAGHPRAEAI
VGAAVRRFRPIMLTALTAVLALIPISRGLFWGPMAYAMMGGILVATVLTILVLPAAYALF
FGREPKAKKEDEKPASQGELFEEHRDMPMAAE