Protein Info for Atu5352 in Agrobacterium fabrum C58

Annotation: TnpA family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 PF01526: DDE_Tnp_Tn3" amino acids 91 to 477 (387 residues), 478.5 bits, see alignment E=7e-148

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5352)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3A4 at UniProt or InterPro

Protein Sequence (502 amino acids)

>Atu5352 TnpA family transposase (Agrobacterium fabrum C58)
MPRTTFITLKEEDRLGLGVQADGAQWLAEARQMLDFNLQRLAHRARSGKLEGVRLEAGTL
IITPTASEIPAAAEALNAEISDMYPLVEVPDLLREVHEWTGFADQFTHVRTGDVPKNVSA
MLAGVLADATNLGPKRMAGASKGISAHQIGWMRTFHARSETYRTAQACITDAHTQHPHSR
LWGNGTTSSSDGQFFRASDRAAKRGDINLHYGSEPGSKFYSHLSDQYGYFSILPISPTES
EAAYVLDGLFDQDTVLDIQEHFTDTGGASDHMFGLFALIGKRFSPRLRNLKDRKFHTFEK
GDAYPALSNHIGAPINANLILDHWDDLLHLAASITTRSVVPSTILKKLSATPKQSHLARA
LREFGRIERSLFMIEWYSSPALRRRCQAGLNKGEAAHKLKRAVFFHERGEIRDRSFESQA
FRASGLNLVVSAIVHWNTVYLDRAITQLKREGRNIPDTLLKHISPLSWEHINLTGIYTWD
AEHQMPDGFRSLRLPAGLRRVA