Protein Info for Atu5346 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein (oligopeptide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 78 to 103 (26 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 199 to 220 (22 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details PF12911: OppC_N" amino acids 15 to 42 (28 residues), 29.9 bits, see alignment (E = 4.2e-11) PF00528: BPD_transp_1" amino acids 92 to 267 (176 residues), 97.3 bits, see alignment E=9.7e-32

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to atu:Atu5346)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3B0 at UniProt or InterPro

Protein Sequence (275 amino acids)

>Atu5346 ABC transporter membrane spanning protein (oligopeptide) (Agrobacterium fabrum C58)
MTSLARTIRTMPLTALIGLIIIVIYVLLVTFAPMIAPYDQAEIVGAQFEPWSTAFPVGTD
ALGRDMLSRLIWGARNTVGIAATTTVLAFALGAIAGLLAAALGGWFDLVLSRIVDVMMAV
PPLILTLLALSALGSGVVNLILIVAVLDSTRVFRLARATAANVMVMDYVEAAKLRGDGIA
WIIRKEVLPNITAPLIAEFGLRFCFVFLTISALAFLGLGLPPPMADWGAMVRDNAALITF
GDITPLLPAACIAVLTVSINFVVDWMLHRASGLKD