Protein Info for Atu5339 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 243 to 261 (19 residues), see Phobius details amino acids 267 to 284 (18 residues), see Phobius details PF00892: EamA" amino acids 5 to 138 (134 residues), 74.7 bits, see alignment E=4.7e-25 amino acids 153 to 284 (132 residues), 60.2 bits, see alignment E=1.4e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5339)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3B6 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Atu5339 hypothetical protein (Agrobacterium fabrum C58)
MPVKYLLFSLLAVLIWVGNTIVSKLAAGAIAPGTIAFERWFIAFVILTPLVYRDAWRHRR
TIAAHLPKLILLGLLGMAACQGLGYYAAGLTTATNMAIMLSLVPLLTLILSAVFLAERPS
SLAVIGGIISLSGIFIVLGQGDPSRLLSQGVGRGDAMMLAAVLAYAGYGILLRRWAIPLA
TWTSIYVQIGAAVVLLVPSYLLSAPSALTLPNTAMVLYAAIPGSILAPFVWMTAVKHLGA
ARTAIFMNLIPIFTAIVAAIFLGEALYIYHLLGGGMTVAGIILVQRKPFREKSGQKAVVA
RAQ