Protein Info for Atu5206 in Agrobacterium fabrum C58

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 228 to 247 (20 residues), see Phobius details PF00126: HTH_1" amino acids 11 to 68 (58 residues), 60.7 bits, see alignment E=1e-20 PF03466: LysR_substrate" amino acids 94 to 295 (202 residues), 130.3 bits, see alignment E=6.8e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5206)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3N1 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Atu5206 LysR family transcriptional regulator (Agrobacterium fabrum C58)
MAEPESVEILDLISFIRVVETGSIAGAASRLGIAKSIVSRRISRLENFLGATLLTRSQKG
TALTDVGREYHLRAASGLAELESAQEMVVRSTTEASGQVRVSVPVAFGEFCLAPLLAEFA
LLHPRIHFDVRFEDRQPDLVAEAYDLAVRIGSIPDSVLITRKLAKVRWAVVASPSYLEAR
GRPSKPSELAAHNAILYSFDTFGWRFQGPDGWEQVRVNSQFRSDNGQMMLSAARAGLGIV
VLPVFMVQESLASGDLEEVVPGYSHAGADLHILMPPARAGIARVRALVNFLYEKFEREI