Protein Info for Atu5200 in Agrobacterium fabrum C58

Annotation: efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 238 to 256 (19 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 310 to 331 (22 residues), see Phobius details amino acids 336 to 353 (18 residues), see Phobius details amino acids 365 to 389 (25 residues), see Phobius details amino acids 400 to 422 (23 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 418 (394 residues), 42.4 bits, see alignment E=2.2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5200)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3N7 at UniProt or InterPro

Protein Sequence (452 amino acids)

>Atu5200 efflux protein (Agrobacterium fabrum C58)
MVAGSPATPEHALTLRIAYALVAILVGLIGGLGNALVMVNITELKTGLALSSVQAAWLPT
AYAMTNISANLLLIKFRQQYGLCVFTLVALGLYALLSLTYLLTADHWLTLAIRAASGFVA
AALTPLSLFYVMQALPGRWRVRGLILGLGISQCAFPLATVISPWLSISSHWQSIFLLEAG
LAFLSLAAVGTFRLPPAERERVFEPSDFLTFLLLASSLALIAAVLGLGRLEGWFKAPWII
WFLSLALPMIIAALILEKGRTVPLLNLRWLGSDDIARLAFAILMARVVLAEQNVATKFLS
ALGGSDEHLRALSIVTFVSAVAGVIVSAIAVNVEKLVMPMMLAVTAIAAATLAESSATSL
EHLPWFYLSQAVISFAAMFFLGPALVLGITSALQKGGRELLSFIVLFGAINSIGAFTGQA
LFGSYIDGARLLREIGFLPTRTPCAWQQCWLS