Protein Info for Atu5193 in Agrobacterium fabrum C58

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 633 PF02129: Peptidase_S15" amino acids 377 to 518 (142 residues), 47.2 bits, see alignment E=8.8e-16 PF20434: BD-FAE" amino acids 396 to 587 (192 residues), 37.9 bits, see alignment E=4.9e-13 PF12697: Abhydrolase_6" amino acids 403 to 609 (207 residues), 31.1 bits, see alignment E=1.3e-10 PF00326: Peptidase_S9" amino acids 420 to 631 (212 residues), 146.7 bits, see alignment E=2.5e-46 PF01738: DLH" amino acids 425 to 615 (191 residues), 28 bits, see alignment E=5.7e-10 PF00756: Esterase" amino acids 468 to 517 (50 residues), 23.4 bits, see alignment 1.7e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5193)

Predicted SEED Role

"Probable dipeptidyl anminopeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLL2 at UniProt or InterPro

Protein Sequence (633 amino acids)

>Atu5193 peptidase (Agrobacterium fabrum C58)
MTAPDLIPIETLFGMPEFSRAQISPDGRLVAYLAPWRGRLNIWVRPVGQGTARRLTGDDT
RNIDGFSWTRDTRYLLFIQDTQGDENWHLHRVEVDGAEAVGGKARTVDLTPYSGVRVMGL
ELSAAFPSKAFVQMNLRTPDLIDLYEVDIESAETRVAALNPGRFVRWIVTPNGPMHAFII
NDVGDHELARYENGVFTTLAKLSGRDQPIGPMPLMVAADGESVLVGCNAGSDHTYLAAID
LATGKCRVIDSQPDCSLDTPRPEADPRFPSSLITNPVTGELLAVRYLGKRQQIRPLNLRF
AAVLNSLQRLSDGEIGYISCDAGGRQWVAEFWDDRHPGTTWFYEHESGEAHVLGERFSAL
SAERLVSVRPIDVISRDGLTLPCHVTLPVGFDAKDEPRALPTVLLVHGGPWYRDACVYDP
EVQFLANRGYAVLQVNFRGSTGYGKAFMQAAIGEFSGRMHDDLIDGLDWLIGQGIADPAR
VAIYGCSYGGYAALVGASFTPERFTATISYSGISDLRMLVNGVVPFVQPTLINTYLSYMG
DPDIETQNRDMLARSPVSRLDCISKPLLVVHGANDVRVAKAQADMVVERVRANGVEVDYL
LNEREGHWFINEDSNIELYRKIERFLARHLRGE