Protein Info for Atu5133 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 271 to 288 (18 residues), see Phobius details amino acids 300 to 326 (27 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details PF12704: MacB_PCD" amino acids 29 to 189 (161 residues), 37.8 bits, see alignment E=2.5e-13 PF02687: FtsX" amino acids 252 to 370 (119 residues), 43.3 bits, see alignment E=3.3e-15

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to atu:Atu5133)

Predicted SEED Role

"AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLM5 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Atu5133 hypothetical protein (Agrobacterium fabrum C58)
MRAAEHISGHGLTRWFLADTRQQLPGLSLALMALLLALSANIGVGTMVSSFRQTFVGWLD
QRLAAEVYVTARDEAEAAHLRQWFPHHARAVLPIWSTEGEISGQDVRIFGVADDATYRDH
WPLISGALATWDEIASGKGALVNELFWRSGKASPGAEIEMPGGWKARVVGVFSDYGNPRG
EVIIGLDALVQHYPDVEKLRYGLRMQPQEVAGFRQCLMTEFGLPEANIVDQVSLKRQSAA
IFEQTFAVTGALNVLTLAVAGFAMFSSQLTLASLRLPQLAPVWALGLRRRDLAMLELLRT
LALWLVTFIAAIPVGLGLAWVLLAIINVEAFGWRLPLILFPLDWLRLGLVALLAAIISVL
IPVRRLAKTAPADLLRIFASER