Protein Info for Atu5111 in Agrobacterium fabrum C58

Annotation: conjugal transfer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1542 TIGR02768: Ti-type conjugative transfer relaxase TraA" amino acids 1 to 780 (780 residues), 1038.9 bits, see alignment E=0 PF03389: MobA_MobL" amino acids 17 to 249 (233 residues), 226.5 bits, see alignment E=1.2e-70 PF13604: AAA_30" amino acids 391 to 578 (188 residues), 184.6 bits, see alignment E=5.1e-58 PF13245: AAA_19" amino acids 395 to 519 (125 residues), 50.3 bits, see alignment E=8.6e-17 PF17841: Bep_C_terminal" amino acids 1309 to 1397 (89 residues), 37.7 bits, see alignment 6e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5111)

Predicted SEED Role

"FIG00804806: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D3W2 at UniProt or InterPro

Protein Sequence (1542 amino acids)

>Atu5111 conjugal transfer protein (Agrobacterium fabrum C58)
MAIMFVRAQVISRGAGRSIVSAAAYRHRARMVDEQAGTSFSYRGGGAELKHEELVLPDQV
PAWLRAAIDGKSVVAASEALWNAVDAFETRADAQLARELIIALPEELTRSENIALVREFV
RDNLTSKGMIADWVYHDRQGNPHIHLMTALRPLTEQGFGPKKVPVLGADGEPLRVVTPDR
PKGKIVYRLWAGDKETMKAWKIAWADTANRHLALAGQEIRLDGRSYAEQGLDGIAQKHLG
PEKAALARKGVAMYFAPADLARRQEMADRLLADPYLLLKQLGNERSTFDERDIAKALHRY
VDDPADFANIRSKLMASNDLVLLKPQQANLQTGKVAELAVFTTRDILRTEYDMAQSAEVL
ARRKGSGVANAKIAAAVRTIETGNPENPFTLDREQVEAVHHVAGDTGIAAVVGHAGAGKS
TLLAAARVAWESDNHRVFGAALAGKAAEGLEDSSGIRSRTLASWELAWENGRDLLDRRDI
FVIDEAGMVSSQQMARVLKRAEEAGAKVVLVGDAMQLQPIQAGAAFRAISERIGFAELAG
VRRQREEWAREASRLFACGKVEEGLDAYAQRGRIVEAESRAEAVERIVADWTSARRELIQ
QHADKEQPVRLRGDELLVLAYTNDDVRRLNEALRNVMKDEGALTVSREFQTERGVREFAV
GDRIIFLENARFLEPRAQRLGPQYVKNGMLGTVVSTGDTHGGPLLSVRLDNGRDVVISED
SYRNVDHGYAATIHKSQGATVDRTFVLATGMMDQHLTYVSMTRHRDRADLYAAREDFEPK
PGWGKRSRVDHAAGVTGELVGTGNAKFRPQDEDTDKSPYADVKTDDGTVHRLWGVSLPKA
LEEGGVSEGDTVTLRKDGVERVTVTVSVIDEKTGEKRFEERTVDRNVWTAKRIETAEVRR
QRIEEESHRPEQFKQLVERLGRSGAKTTTLDFESEAGYHAHARDFAKRRGIDTLSGVAAW
MEDGAGRQLAWLAQKREQVAKLWERASVALGFAIESEKRVSYSEERAETRTAKIPTDRQY
LIPPTTLFSRGVGEDARRAQLRSDHWKERDAILRPVLQQIYRDPEGALARLNTLASDARI
APRELADDLEASPQRLGRLHGSDLLVDGRAARSQREAALSALSELLPLARAHATEFRRQV
ERFGMREEQRRAHMAVSVPALSKPAMARLAEIEAVRERGGKDAYKTAFAYAAEDRLFVQE
VRGVNDALNARFGWSAFTDKADTVAQRNMIERMPDDLDLDRREKLNRLFAAIRRFAEEQH
LAERKDRSRIVTGASVVPGKETVPVLPMLAAVTEFETPIDHEARERARAVPHYSQNRAAL
ANAAARIWRDPAGAVGKIEDLILKGFAGERIAAAISNDPAAYGALRGSGRIMDKLLAVGQ
ERKEAFRAVPEAASRVRLLATSFRAAFDAEREAITEERQRMSIAIPGLSPSAEDALRELS
VAMKKKNGRLDVAAGSLDPAISKEFATVSRALDERFGRNAILRGELDVINRVPPAQRRAF
EVMREQLKVLQQVVRMQASQNIVAERHRLVLDRARGVILFNQ