Protein Info for Atu5090 in Agrobacterium fabrum C58

Annotation: Curdlan synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 transmembrane" amino acids 13 to 31 (19 residues), see Phobius details amino acids 39 to 56 (18 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 376 to 399 (24 residues), see Phobius details amino acids 411 to 435 (25 residues), see Phobius details amino acids 487 to 505 (19 residues), see Phobius details amino acids 519 to 539 (21 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 118 to 345 (228 residues), 89.8 bits, see alignment E=5.8e-29 PF00535: Glycos_transf_2" amino acids 122 to 290 (169 residues), 74.8 bits, see alignment E=1.6e-24 PF13506: Glyco_transf_21" amino acids 202 to 344 (143 residues), 32.4 bits, see alignment E=1.3e-11 PF13632: Glyco_trans_2_3" amino acids 203 to 422 (220 residues), 83.7 bits, see alignment E=3.2e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu5090)

Predicted SEED Role

"Cellulose synthase (UDP-forming) (EC 2.4.1.12)" (EC 2.4.1.12)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.12

Use Curated BLAST to search for 2.4.1.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLP5 at UniProt or InterPro

Protein Sequence (657 amino acids)

>Atu5090 Curdlan synthase (Agrobacterium fabrum C58)
MDSFLYLSELQSSFAHLALAFGCALVLPYLLNNRNWTHRTFLFAIGMALAVRYIWWRGTQ
TLAPPGFTLDCLFSWSFFALEALSVLSSLSAFTILTRTTDRSPEVEENKSWWKPDPPPKV
AILIATYNEEQAVLERTIVGAKASDHPDVQVLVLDDGRRDWLRDFCEEHDVRYLRRPDNK
GSKAGNINHALGVLAQDDQPPDFIAVLDADFVPHTDFVSRALALFHDQEVGLVQTPQHFF
NPDPIQHNLGLSRSYPDEQRFFFDHLQPSRDGWGIAFCCGTSSVIRWRAVQASGGFPTDS
ITEDFMLTLQLQEYGYRTVYLNEALTEGLAPEGLKEYVTQRARWCLGLMQIARGRLGPFS
RNNLRLRDRWSVVDSVFFWLTTFTFRIASMTFPLFYWFFNITVVNASVPDVISYFGAYMV
WILFVLNFISSGMVIPIVNDVSQLLGALPISRAAIVGLVKPKGHPFSVTAKGGDRTKVVV
QWRLMRPFLLLTFLTVAGVLIGLVSDRFAFNDAGDGKVVILFWTVYNLVILAVTLLVCVE
LPRREKHYADRPERVVISLGGALKRVWMTDLTQETARLRGVDAPIATQVIMKLKEIGDFT
ATVLDRTDDGLVVALGLDETQYQLLLKRLYAGGSVPSVTSTRLSAIIRDATTRFARR