Protein Info for Atu5081 in Agrobacterium fabrum C58

Annotation: ABC transporter membrane spanning protein (sugar)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 21 to 48 (28 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 197 to 220 (24 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 284 (185 residues), 59.2 bits, see alignment E=2.4e-20

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu5081)

Predicted SEED Role

"ABC-type sugar transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLP8 at UniProt or InterPro

Protein Sequence (292 amino acids)

>Atu5081 ABC transporter membrane spanning protein (sugar) (Agrobacterium fabrum C58)
MTLALTSATTQPKKRRGRRIGLYVILFHITCILVGLLFLAPIVLVLLASFRPPAMASSGL
FSVQGLGFGNYGRLEDFGAGILHYAGNSLFVALATAAFTILVSVFAGYGFSRFRFPFKLV
AFVLILSTIMVPFQSILTPLFLILPKLGLQNTLSGLVFIYVTLQLPFSIFMMRNAFDAVP
KEIEEAARIDGVKGLRALVYVLGPLVFPGIVSVGLFAFLNAWNEFLGALVLLTDQDRYTL
PVLVTAVRSGRYGSIDWGAVQAGVTVMMIPCLILFVTLQRFYIRGLTAGAVK