Protein Info for Atu5068 in Agrobacterium fabrum C58

Annotation: ABC transporter nucleotide binding/ATPase (oligopeptide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 PF00005: ABC_tran" amino acids 26 to 184 (159 residues), 100.2 bits, see alignment E=6.9e-32 amino acids 291 to 443 (153 residues), 118.4 bits, see alignment E=1.7e-37 PF08352: oligo_HPY" amino acids 235 to 261 (27 residues), 25 bits, see alignment (E = 9.3e-09) amino acids 495 to 527 (33 residues), 23.7 bits, see alignment (E = 2.3e-08) PF13401: AAA_22" amino acids 304 to 473 (170 residues), 27 bits, see alignment E=2.2e-09

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu5068)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CLQ7 at UniProt or InterPro

Protein Sequence (539 amino acids)

>Atu5068 ABC transporter nucleotide binding/ATPase (oligopeptide) (Agrobacterium fabrum C58)
MADHLLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLID
MPPGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREALR
THGIDNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLIAD
EPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESGTV
REVYRNPQHPYTKKLIAAAPGKGQLHEPSTDGEPILKVRNARKSYGGFEALKGISFDLKA
GETVAVVGESGSGKSTLARILLRLDDPDSGTAHWKGQDLFTLSPSELFKLRRDLQMVFQD
PTQSLNPRMTVYQLISEAWVIHPEILPKAKWRARAAELLERVGLSPEHMGRYPHQFSGGQ
RQRIAIARALALEPQLIVCDEAVSALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVR
DFADYVMVMQKGEVVEFGTVAQVFDNPQQRYTQALISATLDPDPDVQAANRNARLASIS