Protein Info for Atu4855 in Agrobacterium fabrum C58

Annotation: conjugation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1266 TIGR02768: Ti-type conjugative transfer relaxase TraA" amino acids 1 to 777 (777 residues), 1142.3 bits, see alignment E=0 PF03389: MobA_MobL" amino acids 17 to 229 (213 residues), 229.7 bits, see alignment E=9e-72 PF13604: AAA_30" amino acids 382 to 569 (188 residues), 215.7 bits, see alignment E=1.2e-67 PF13245: AAA_19" amino acids 386 to 512 (127 residues), 51 bits, see alignment E=4.2e-17 PF01443: Viral_helicase1" amino acids 720 to 763 (44 residues), 21.4 bits, see alignment (E = 5.1e-08) PF17841: Bep_C_terminal" amino acids 1042 to 1123 (82 residues), 34.3 bits, see alignment 5.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4855)

Predicted SEED Role

"FIG00804806: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CW18 at UniProt or InterPro

Protein Sequence (1266 amino acids)

>Atu4855 conjugation protein (Agrobacterium fabrum C58)
MAIYHLSTKPVSRSSGRSAVASAAYRCAVLLVNQRDGLVHDFTRKEGVAHSEIVLPQGVS
AGWALDRSTLWNAAEFAEKRKDARVAREFEIALPHELSPEGRLKAARAFAQDLANRYGAA
VDFAIHSPSEHGDIRNHHAHVLMTTRQVGKAGLGEKTCLEHKNARLLANGMATTDMQLRD
IRQSWEGIANRQLQHEGLDVRIDHRSHIERGLELSPTEHMGVHASQMRQQGMAVERGRLD
DEAARQNAALIRQKPEQVLTLISHEKSVFDRHDIAKTLHRYINDDAQTFQNAFAAVLASS
ALVELQAERIDPGTGKVSNARYSTREMIDLELAMARSAVRLHQAQSHGVDPRHVDRAIER
QDRSLRRSSGGMLAASDPSAGLSDEQRHAIKHITGSERIAVVVGFAGAGKSTMLTAARKA
WEAQGYQVHGAALSGKAAEGLEESSGIESRTLASWSYSWDQGRNLIGSSDLFVIDEAGMV
GSRQLARFIGEAEERGAKIVLVGDHEQLQAIGAGAPFRAIAEQIGHVELSGIRRQRHDWQ
RQASVAFATHKTAEGLAAYRDHGDIHFAESRDAAMAQIVRDYIDDNEKRPDGTRVAMAHR
RADVRALNATIRSELQNRQRLERSLGLSDGPDRGDRGDVEDRGNSGDVAELTFQTSNGKR
AFASGDRIIFLENNRDLGVKNGMLGTVEDVEKGRIVARLDGRGGDSVSIPTDSYQAIDHG
YATTIHKNQGATVDRAFVLASSTMDRHLAYVAMTRHRDSVQLYADIKEFTSAGRLVDHGV
APYEHNRRARENYFVTLENDKGERHTVWGVDLNRAMRDASPAIGDKIGLQHVGATPVTLP
DGTKAERNAWRVVKGEELAYQKLASRLSRSGAKETTLDYISEFAERRGIASDPRIAGDQG
IADQLGLKSEIELASARKDRQEVLSRAAHLQREQQDRPSERQQVYEERAGDLAGPVRRGH
PRSPFARDIDEGQQDDRAEETNRYRRIRWSDLMSQDGAVPPPTETVGQQSSLETGRPTPL
VPAITRYQRSIEEVAQQRALSVIDQQFDTVESLVRRVFRDPAEVAARLRAAMTEKEGNGK
IMAKAMAGQPERFGELRGESGLFGSNKERKEALQYARSLSAHIGYVSEAWERRLGEERQS
EQWQREQRDVIEVPGLTPRSAEILAKVEEMQVEKRGKFIKDLRSSAEGQAALDEARQVAD
ALTRRFGSSDPRRFAEELEARPELAKQAEQIQTIARMVHRTRHAELSHDYALKRQLNRSQ
GLGLSR