Protein Info for Atu4841 in Agrobacterium fabrum C58

Annotation: DeoR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF08220: HTH_DeoR" amino acids 10 to 45 (36 residues), 27.8 bits, see alignment 1.7e-10 PF00455: DeoRC" amino acids 79 to 237 (159 residues), 172.3 bits, see alignment E=8e-55

Best Hits

KEGG orthology group: K11534, DeoR family transcriptional regulator, deoxyribose operon repressor (inferred from 100% identity to atu:Atu4841)

Predicted SEED Role

"Deoxyribose operon repressor, DeoR family" in subsystem Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CH78 at UniProt or InterPro

Protein Sequence (243 amino acids)

>Atu4841 DeoR family transcriptional regulator (Agrobacterium fabrum C58)
MSRISAHNARLDALAGLVQETGVLRLRDAASRLGVSEITIRRDIAADGERLSCLGGYIIP
VQDGTVSSDYVLEQEKDSHATAKARACRQAAVMIEPYDTVFIDCGTTMPHLARQIPANAH
VTVICYSLNVAEELASRNDVRLIMLGGVYHPEAASFSGDEGIEVLKRININKAFLSAGGV
DEQHGVTCSHFHEVPIKQMVMQRSMQKHLVVDSSKFSKVRAARYASIGDFNSIVSDQPLP
FVK