Protein Info for Atu4839 in Agrobacterium fabrum C58

Annotation: C factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details signal peptide" amino acids 26 to 27 (2 residues), see Phobius details PF00106: adh_short" amino acids 45 to 193 (149 residues), 49.4 bits, see alignment E=4e-17 PF13561: adh_short_C2" amino acids 46 to 197 (152 residues), 51.3 bits, see alignment E=1.2e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4839)

Predicted SEED Role

"D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)" in subsystem Polyhydroxybutyrate metabolism (EC 1.1.1.30)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.1.30

Use Curated BLAST to search for 1.1.1.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CH77 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Atu4839 C factor (Agrobacterium fabrum C58)
MKTLENGYRAIVIGASGGIGAALLARLKADPRCAFALPLSRSHDGLDITDETTVREAAAR
LEDQRGSFDLIFNATGALVVDGAGPEKSIRAIDADLMAKQFAVNAIGPALLLKYFTPLLQ
RDRRSVFASLSARVGSIGDNRLGGWISYRAAKAAQNQIIRTAAIEIARTNRQAIIVALHP
GTVDTDLSQPFSKGRDRFTPDHSAVRLLETINGLDESQTGRFFAHDGSTIEW