Protein Info for Atu4833 in Agrobacterium fabrum C58

Annotation: glucoamylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 PF09137: Glucodextran_N" amino acids 8 to 272 (265 residues), 328.2 bits, see alignment E=4.5e-102 TIGR01535: glucan 1,4-alpha-glucosidase" amino acids 34 to 702 (669 residues), 1071.9 bits, see alignment E=0 PF00723: Glyco_hydro_15" amino acids 376 to 682 (307 residues), 86.3 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: K01178, glucoamylase [EC: 3.2.1.3] (inferred from 100% identity to atu:Atu4833)

Predicted SEED Role

"Glucoamylase (EC 3.2.1.3)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVZ6 at UniProt or InterPro

Protein Sequence (800 amino acids)

>Atu4833 glucoamylase (Agrobacterium fabrum C58)
MRAALDFAPGAPGIDARWTSSAKNGVGTALSNTSPIWFTLSHGILNEVYYPRIDSACIRD
LGLVVTRDDGYFSEEKRDCTSLTQPFESGIPAFHVTNTATDGAYRIEKQVITDPARACVL
LHVSFSPLKGKMGDYRVSVLLAPHLVNAGNLNSAWIGDYEGRRVLFAVGRSRYLALVCDG
PWRAASAGFVGVSDGWQQLRRHGRLIEEFQRADDGNVSLAAEIDFSDAHDTATLALGFGQ
TEYEAASCAVASLKSGFRRAHDAYIANWRGWQDSLCPLDRDTHHGVNSYRVSTAVLAAHR
AADRPGAVVASLSIPWGASKGDDDLGGYHLIWPRDLVEAAGGFLAAGDHDEALAILDYLR
QVQQPSGRWPQNLWLDGKPYWPGVQMDECAFPILLADMLHRHGHLDHAARADYMPMIRSA
AAYILANGPTTGEDRWEEDAGYSPFTLAVEIAALLAAADLLDMEGDAAEATHLRQTADCW
NEQIERWTFAGDQTMCAQLGISGHYVRIASPGTTDAVQLSGMTPILNQTPDRAFLPTSDV
ISPDALALVRFGLRAPDDPHILATVKAIDHCLRAELPQGPVWYRYTGDGYGEHADGTAFD
GTGQGRPWPLLTGERAHYELAAGRRGAAEALLTTMEKSAGQSGLFPEQVWDQPDLPDREL
FYGSPSGSAMPLVWAHAEHIKLLRSLADGSVFDMPPQGVERYIRNKTPSHLRIWCFNNTI
SAMPTGKVLRLELADNAIVHWSADSWATSTDTNTTASGLGTHFADLPVQELAAGGTVVFT
FYWRDAGVWENEDFTVRLGE