Protein Info for Atu4827 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 177 to 194 (18 residues), see Phobius details amino acids 206 to 237 (32 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 340 to 363 (24 residues), see Phobius details amino acids 370 to 393 (24 residues), see Phobius details amino acids 414 to 434 (21 residues), see Phobius details amino acids 445 to 463 (19 residues), see Phobius details amino acids 475 to 496 (22 residues), see Phobius details amino acids 516 to 547 (32 residues), see Phobius details amino acids 561 to 584 (24 residues), see Phobius details amino acids 600 to 623 (24 residues), see Phobius details PF04290: DctQ" amino acids 44 to 171 (128 residues), 89.8 bits, see alignment E=1.4e-29 PF06808: DctM" amino acids 213 to 619 (407 residues), 376 bits, see alignment E=2.3e-116 TIGR00786: TRAP transporter, DctM subunit" amino acids 221 to 624 (404 residues), 272.6 bits, see alignment E=2.5e-85

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4827)

Predicted SEED Role

"Predicted gluconate TRAP family transporter, DctM subunit" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVZ3 at UniProt or InterPro

Protein Sequence (625 amino acids)

>Atu4827 ABC transporter permease (Agrobacterium fabrum C58)
MTMTANANDDVFVLDGELLHTAPVTGSWFMRPIEAVAAVLLAMMIGLLLLGVTSRYALHL
PIVWIDETASLCFLWFAMLGAAIAIDRSEHLRLTLFLNMFPQRVLGYINSLALVLVATFL
AAIIKPAMEYAIEEWVVTSAALNIPMSFRAAALPVGACLMLLLVLNNLFRRENLRDIIAA
FVTVAVAAGLLYLASPMLESLGNLNLAIFLGLFVAVFLVLGVPIAFCFGLGTLAYLTFTT
WVPTIVMIGRMDEGMSGIILLSVPVFVLLGCVLDATGMGKAIVELLSSMFGHIRAGMSYV
LLGSLFLVSGISGSKVSDMATVAPALFPEMKRRGHKPKEMIALLATGAAMADTVPPSIVL
IVLGSAAGVSIAGLFTSGFMIAMVLLLVLAVLARWKARDENMEGAKRTPWPQVGKAALIA
APALVLPFLIRSLVGGGVATATEVSTIAVLYAMIVGAVLYGGISLRKLYSMLVETAALSG
AILLILGCASAMAWGLTQSGFAFQLTAMITDLPGGWMTYMVVSILIFMILGCVLEGLPAI
VLLAPIMFPIARTLGINDIHYSMVVVVAMNIGLMAPPIGIGFYIACKIGNVSPDEAMGAI
WPYLAAMIIGLLLIAAIPGFSTILL