Protein Info for Atu4781 in Agrobacterium fabrum C58

Annotation: two component sensor kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 710 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 272 to 295 (24 residues), see Phobius details PF02518: HATPase_c" amino acids 594 to 697 (104 residues), 70.3 bits, see alignment E=2.9e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4781)

Predicted SEED Role

"FIG00986041: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVU9 at UniProt or InterPro

Protein Sequence (710 amino acids)

>Atu4781 two component sensor kinase (Agrobacterium fabrum C58)
MINRLFLQSIAFRLPFAIVFICSSVFILSAVAIYGLQKAKTEMATYSLQAFSSLARASLV
SRQVADLVSSAPLLMNATSPYRVSSESRAVVSQVDSLLETIAQYKKAETQNAIPNDDIVE
LLQAIRQQTLSLAADADAAQQHKAEAAAALGEIATGQAVTEGALRQRLNAIVQAAANSAS
LFQLGELQRRFTSETGYFMNEPAAMDDAGAEGLVPYKRVFDAQTQYLLEMFAIQSSVSKL
HVVSRNLSHATETQSEAVAHRLTQGLASASAALTRLIVMVAIAFVVVIILSTLSIRSVMR
VSHGITALSGGMNSLANGEQNVSLPTYRGSETELIRLSDAFHAFKDSVDRVSRLRRTAEA
AARTIRSTFRTMNEGIALFNANGQPITMNRRIIELVGKRGGYSRKLPLRAFIETIPEIDP
GLLPSSDDPGGLASRITVRHRTQDQQVTEIAVSRQPDGGIVLLARDVTALDRQEAEAAKA
QRLDGIMRMTHQLSHEVGNMIGIITGSLGLLERETGFSERQQRNINRIRKAADRGRQLAS
SMLSIGSQQPIHPAYVDVAALLKGMVDVLEIAVGTRNQINLRLQDDLPRLALDAALFEQS
ILNLCLNSAAAMPTGGVIIIAAEKSDNVVEISVEDNGHGMDQDAVDRAFEPYFTTRAQQG
GTGLGLAMVYGFMRQSGGDAKITSQPGCGARVSLTFPIFGKQDDMPDDAR