Protein Info for Atu4701 in Agrobacterium fabrum C58

Annotation: oligopeptide ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF00005: ABC_tran" amino acids 47 to 191 (145 residues), 93.9 bits, see alignment E=1.5e-30 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 240 to 326 (87 residues), 101.1 bits, see alignment E=1.4e-33 PF08352: oligo_HPY" amino acids 242 to 306 (65 residues), 80.9 bits, see alignment E=7.2e-27

Best Hits

Swiss-Prot: 47% identical to Y2547_BRUO2: Putative peptide import ATP-binding protein BOV_A0347 (BOV_A0347) from Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu4701)

Predicted SEED Role

"Putative glutathione transporter, ATP-binding component" in subsystem Utilization of glutathione as a sulphur source

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CVM5 at UniProt or InterPro

Protein Sequence (340 amino acids)

>Atu4701 oligopeptide ABC transporter ATPase (Agrobacterium fabrum C58)
MTQSASHKAASHQPALTVKGLTKTFDVSAPLLNRIIERKPRQFVQAVNDIDFAVPAGGCL
SIVGESGCGKSTVARLVTGLFRPSAGAFQFASGGNGKPLSAQMIFQDPYASLNPRWRVKN
IIAEPIRELKLRATKAEAMERVEELLQTVGLSASDGEKFPHEFSGGQRQRISIARALASE
PEFLVCDEPTSALDVSVQAQVLNLMRRLQDELGLTYLFISHDMSVVRHMSDRIAVMYLGR
IVEEGDTEELFANPRHPYTRLLLQTIPNIKTPQRDREIVAGEVPSPLKPPSGCAFHPRCP
LATAQCSAEVPKVKSLANGTRVACHLVEDDTEWAGQRQRA