Protein Info for Atu4636 in Agrobacterium fabrum C58

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1048 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 388 to 407 (20 residues), see Phobius details amino acids 428 to 450 (23 residues), see Phobius details amino acids 459 to 481 (23 residues), see Phobius details amino acids 533 to 553 (21 residues), see Phobius details amino acids 859 to 878 (20 residues), see Phobius details amino acids 888 to 908 (21 residues), see Phobius details amino acids 914 to 937 (24 residues), see Phobius details amino acids 962 to 983 (22 residues), see Phobius details amino acids 993 to 1017 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1014 (1010 residues), 881.6 bits, see alignment E=3.4e-269

Best Hits

Swiss-Prot: 53% identical to NOLG_RHIME: Nodulation protein NolG (nolG) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 100% identity to atu:Atu4636)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGX6 at UniProt or InterPro

Protein Sequence (1048 amino acids)

>Atu4636 AcrB/AcrD/AcrF family protein (Agrobacterium fabrum C58)
MFLTRISVNHPVFATMMMVALLVMGAFSLQRLGLDQYPNVDVPVVVVVTSYPGATPETVE
MEVTRPVEDALNAIGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIEANFP
EDTKKPVISRFDPAAEPILSLAISSTSLDVPALATLAEQKVVRQLTTVAGIGQATLVGGR
KRQIDVTIDETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRIEEPEAL
LDMVVARRGGVAILLRDVATLSEGAADAENRAIYNGQTALAIDIVKVQDANTVQVVSDVR
KRLDALNAELSPQNIQLRIVTDSSIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTV
ITGLTLPIAIIGTLTVVDFLGFTLNTLSLLALTLSIGILVDDAIVVRENITRHLHMGKSH
LRAALDGTGEIGLAVIATTATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVAFT
LDPMLSSVWYDPDAQADAKRGPIGRLIARFDHGFEWMAGQYRHAIDWTLRHRLVTLLVTA
GIFIGSLFMVPLVGTEFVPDADEGRFQINLTAPVGSSLDYTTAKLQQVKKALREFPEVEM
LYSTINTGGAAGKHRAAILVGLVPLSAREQTPLSLAEPVRKRLSAIPGIEINILQNGLGG
GESPVQLSILGDDRAVLEKIANGLVEDMKKIPGLVEVTSSTKDVTSILSVRLKPAAASDL
GIARADLAAALSALIGGEDVSKWTDAHGNSYDIVVRLPVERRSDAARLGELMITTGRTGA
NGAPLMVRLDQVADIGTVAAPAEIRRFDNRREILVSANITGRTLGDVTETLQGLTASRDL
PAGYRIRFGGEAETMQETVGHMGTALSMAIIFIYIVLASQFGSFLQPLAIMVSLPLSLIG
VLLGLMVAGSTINMFSLIGFIMLMGLVTKNGILLVDFANRERRRGLTLNEALANAGVIRF
RPIIMTTLAMIFGMIPLGLAVGGGGAQRAPMAHAVVGGLISSTLLTLIVVPVILSYIDSI
TRRFARLLPKAPDEVAERGVKNRTVSTV