Protein Info for Atu4575 in Agrobacterium fabrum C58

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 transmembrane" amino acids 46 to 64 (19 residues), see Phobius details amino acids 128 to 146 (19 residues), see Phobius details PF12852: Cupin_6" amino acids 15 to 190 (176 residues), 121 bits, see alignment E=7.9e-39 PF12833: HTH_18" amino acids 231 to 309 (79 residues), 69.8 bits, see alignment E=3.1e-23 PF00165: HTH_AraC" amino acids 275 to 307 (33 residues), 27 bits, see alignment 5.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4575)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGU4 at UniProt or InterPro

Protein Sequence (321 amino acids)

>Atu4575 AraC family transcriptional regulator (Agrobacterium fabrum C58)
MLKRLLFVIDRPIMDPLSDIVDLLRPSAAVSKPISGKGRWGVRYRAHDAPGFALVLAGAA
WVMIEGRDPLRLGRGDFLLLPTTPAFSLCSETGVDCVPVEPQDRAVRHGEQEGMPDFLAL
GGSFAFERINASLLLSLMPGLIYVPAAEKRASRLARLIELLSEECAGEDPGKELIIRRML
EVLLVEALRRPDAGNVAIPAGLVKGMRLPGLARALSAMHADVRASWTVAELAGIAGMSRS
AFSARFLEMVGCAPIEYLARWRMALARDSLIRGVKSLDHIADEIGYESASAFSTAFRRRM
GIAPGSFARANDRRGQQVSFL