Protein Info for Atu4566 in Agrobacterium fabrum C58

Annotation: serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF01569: PAP2" amino acids 228 to 360 (133 residues), 59.1 bits, see alignment E=3.9e-20 TIGR02601: autotransporter-associated beta strand repeat" amino acids 519 to 548 (30 residues), 41.9 bits, see alignment (E = 3.2e-15) PF12951: PATR" amino acids 519 to 547 (29 residues), 40.2 bits, see alignment (E = 2.8e-14)

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4566)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGU0 at UniProt or InterPro

Protein Sequence (660 amino acids)

>Atu4566 serine protease (Agrobacterium fabrum C58)
MAKLNMSSFPSARSTLLASAALLVFVQGAAAFDSNGPAGQGYAIAVPEPVASYPLPLADN
YRNQTGKNAKGEDVRAYDDRDNPIIEILSGFNRIWTLGDEKWVDGGANSDGPPDFSHVRI
VDPAVWQENMRYVLSVTGDNRTRAAAFEAYMNDRRSQGYSVIDGMGPLADWYREGAGATT
TINHTLADFDPNDVIIRKEDDKGTEAGAADSELKDFVAFMKVIRGPEGTTSPAKYFYSTP
RPWRMNDKGEVIETGKEMIGDRSFESYDSDPGVIVPALKYARENRGRAKDGGFPSGHTNA
AYLAAIAYAYAVPERFSELLTAASELGESRIVAGMHSPLDVIGGRITATAMAAAMLQDPK
NAEVKKAAHDAVEAYFAKRLPQGQSLIDFAHGAKPDVDRFADAAKNGAEYRRRMTFSFSR
DKAAGDAAMVVPKGAEVLLETRLPYLNAAERRAVLFSTGIEAGYPLLDDSNGWGRINLVA
AAGGYGAFDGDVEVTMDAASGGFNAADRWTNDIAGAGRLVKSGSGALTLSGNNTYGGGTI
VRDGTLVASSADALGTGGVLVAGGTLSLAAGRDVAIGGDYTQSGGTLVLDPQKVALRIKR
NAVLDGATLKLTFDGGAPAAGTRFDVIAANGLTGTFATIDAGNVKVRPVYTGSALSVVVE