Protein Info for Atu4499 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 transmembrane" amino acids 47 to 66 (20 residues), see Phobius details PF06226: DUF1007" amino acids 50 to 255 (206 residues), 208.3 bits, see alignment E=7.1e-66

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4499)

Predicted SEED Role

"ABC-type uncharacterized transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CV40 at UniProt or InterPro

Protein Sequence (255 amino acids)

>Atu4499 hypothetical protein (Agrobacterium fabrum C58)
MTRVLPLAFRTSPGSGAGSGRNSVPISARVGPSRFEGRTDRIMNRRLLLLAAGLTSIPIA
ASAHPHIFAEARMEIVEGPNGTIQEVRNIWRFDEMFSASVVMDYDKNSDLKLDKDELAEI
GNTVKESLAEYSYYTFITANGKPVEFGKPDAIHVDYKDQQILMFFSVKPAKPLSIKGKLS
FGAWDPTMYTAIDFAKDGDIATEGKDLNACKHHIVRPDPDEVISQNQSSLTDAFFNDPTG
TDMTKLFATRLEISC