Protein Info for Atu4482 in Agrobacterium fabrum C58

Annotation: xylulokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 484 PF00370: FGGY_N" amino acids 1 to 242 (242 residues), 227.9 bits, see alignment E=1.6e-71 TIGR01312: xylulokinase" amino acids 3 to 476 (474 residues), 592.5 bits, see alignment E=2.7e-182 PF02782: FGGY_C" amino acids 252 to 437 (186 residues), 110.7 bits, see alignment E=8.3e-36

Best Hits

KEGG orthology group: K00854, xylulokinase [EC: 2.7.1.17] (inferred from 100% identity to atu:Atu4482)

Predicted SEED Role

"Xylulose kinase (EC 2.7.1.17)" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization or Xylose utilization (EC 2.7.1.17)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CV25 at UniProt or InterPro

Protein Sequence (484 amino acids)

>Atu4482 xylulokinase (Agrobacterium fabrum C58)
MYLGLDLGTSGVKALLMDGDQKIIGSANGSLDVSRPHHGWSEQNPADWIAATKTAVAGLK
QKFAKELAAVKGIGLSGQMHGATLVDAEGKVLRPCILWNDTRSHAEAAALDADPRFRKIT
GNIVFPGFTAPKLAWVAKNEPDIFAKVAKVLLPKDYLRLWLTGEYISEMSDSAGTSWLDT
GARKWSPELLAATGLDEKHMPSLVEGTDEAGVLRTELASEWGISGRAVVAGGAGDNAASA
CGMGTVKEGHAFVSLGTSGVLFAANASYLPKPESAVHAFCHALPNTWHQMGVILSATDAL
NWYSRLTGQSAADLTGELGETLLAPTGVTFAPYLSGERTPHNDAAIRGSFIGLSHESDRK
ALTQAVLEGVTFAIRDNLEALKSAGTSISRVTAIGGGSRSAYWLASIATSLGVPVDIPAE
GDFGAAFGAARLGLIAATGADPVAVCSQPETARTIEPVAALGDAYEEAYRRYHALYPAIR
ALSQ