Protein Info for Atu4476 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details PF03741: TerC" amino acids 19 to 209 (191 residues), 172.4 bits, see alignment E=4.1e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4476)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CV19 at UniProt or InterPro

Protein Sequence (253 amino acids)

>Atu4476 hypothetical protein (Agrobacterium fabrum C58)
MESVLPLLSDPAAWVALVTLIVMEVVLGIDNLIFISILTNKLPPEQREKARKIGIGLALI
MRLGLLGTVAWIVQLTTPVFEIFGHAFSWKDMILIAGGLFLMWKATKEIHHNVDPEDHKE
DMVGGPVAMNFGAAIGQILLLDLVFSVDSIITAVGMTPHLPIMIVAVVFAVAVMLLAATP
LANFIERNPTIVMLALAFLMMIGTTLIAEGMGFHVPKGYVYAAMAFSALVELLNMLARNA
RQRKKAQAAGKPY