Protein Info for Atu4475 in Agrobacterium fabrum C58

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 6 to 21 (16 residues), see Phobius details amino acids 28 to 46 (19 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 94 to 122 (29 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 174 to 199 (26 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details amino acids 420 to 441 (22 residues), see Phobius details amino acids 446 to 464 (19 residues), see Phobius details amino acids 471 to 498 (28 residues), see Phobius details amino acids 501 to 523 (23 residues), see Phobius details amino acids 528 to 547 (20 residues), see Phobius details amino acids 567 to 587 (21 residues), see Phobius details PF03600: CitMHS" amino acids 16 to 535 (520 residues), 248.1 bits, see alignment E=2e-77 PF02080: TrkA_C" amino acids 220 to 284 (65 residues), 35.5 bits, see alignment E=1.1e-12 amino acids 310 to 379 (70 residues), 32.7 bits, see alignment E=8.8e-12 PF00939: Na_sulph_symp" amino acids 397 to 587 (191 residues), 37.7 bits, see alignment E=2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4475)

Predicted SEED Role

"Transporter, TrkA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGQ3 at UniProt or InterPro

Protein Sequence (590 amino acids)

>Atu4475 transporter (Agrobacterium fabrum C58)
MTTEQILAFVVIAGMMVAFIWDRFRYDVIACSALLVAVALGVVPFNKAFSGFSDDIVIIV
GSALIVSSAVARSGIVDMTIKKYFPEMRSKSLQLAFLMIMVAVMSAFIKNIGALAIMMPV
AFQFARKSGSPVSYYLMPMAFAALLGGLMTQIGTSPNIVVSRLREEMTGQSFTMFDFTPV
GAALTVIGIIFLTFGYRLLPVRNRQQASVEDVLDQSAYTAEATLPPDNIFVDRPLRELLK
QADGDVIASTILRGPRRISPFPDVNLKAGDTVLLEGSPEGLDRIVSQSKLLLSGRPLMEN
GQKTVDLISMEAVISKESVLNGISARELALSYTRGVNLIAVSRRGQRVSQRLSELTLQAG
DVILLQGSRKNLPQVLQEFSLLPLAQREILLGVQRRALLPVIVLAAAMLAAGSGLVPVSV
AFFAAAFLMIVVGAIPLAEVYKSIDGPILVMLAALIPVSDSLRTSGASELIAGWLGSAAQ
GLPPFAALGMILLTAMAVTPFLNNAATVLVMAPIAAGFATTLGFRPEAFLMAVAIGAGCD
FLTPIGHQCNTLVMGPGGYRFSDYPRLGLPLSIMIVIASIPMLLYVWPVN