Protein Info for Atu4456 in Agrobacterium fabrum C58

Annotation: CysZ-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 21 to 49 (29 residues), see Phobius details amino acids 65 to 96 (32 residues), see Phobius details amino acids 128 to 148 (21 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 193 to 220 (28 residues), see Phobius details PF07264: EI24" amino acids 9 to 214 (206 residues), 93.6 bits, see alignment E=9e-31

Best Hits

KEGG orthology group: K06203, CysZ protein (inferred from 100% identity to atu:Atu4456)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGP6 at UniProt or InterPro

Protein Sequence (245 amino acids)

>Atu4456 CysZ-like protein (Agrobacterium fabrum C58)
MIFDAARLAFGNLFAAETRSVFWKVLGLTLLVLAALWFAIRSIFIYFALPWIDTLIPGVP
DWAGWLSFVFAIFAGIGLALALALLISPVTAVIAGLFLDDVADVVEKQNYPDDPPGKAMP
IGEAVLSSIKFFGVVIAGNLVALLLLLVPGVNLIAFFLVNGYLLGREFFEFAAMRFRSPA
DARLFRVKHRTTVFMAGLVIAAFLAVPFLNLLTPLFAASLMVHLHKAVSRRDPSFAAGGT
EQLRG