Protein Info for Atu4434 in Agrobacterium fabrum C58

Annotation: oligopeptide ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 PF00005: ABC_tran" amino acids 26 to 183 (158 residues), 81.4 bits, see alignment E=5.1e-27

Best Hits

Swiss-Prot: 48% identical to DPPD_HAEIN: Dipeptide transport ATP-binding protein DppD (dppD) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to atu:Atu4434)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGN1 at UniProt or InterPro

Protein Sequence (278 amino acids)

>Atu4434 oligopeptide ABC transporter ATPase (Agrobacterium fabrum C58)
MSAPLLTVENLRVSFPTRTGLVEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPK
SARIEADTLRFGDIDLLKASAKERRIMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTH
EKIGSGEARQRTLAMLEAVQIRDPERVFDLYPHEVSGGMGQRVMIAMMLVCGPELLIADE
PTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELSSA
NLKEAKHPYTQGLLNCLPEIGGHRHPLPVLERKPEWRA