Protein Info for Atu4423 in Agrobacterium fabrum C58

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 61 to 84 (24 residues), see Phobius details amino acids 97 to 120 (24 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 79 to 248 (170 residues), 43.1 bits, see alignment E=2.1e-15

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 100% identity to atu:Atu4423)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGM2 at UniProt or InterPro

Protein Sequence (259 amino acids)

>Atu4423 ABC transporter permease (Agrobacterium fabrum C58)
MTRQLFIPLTLLLVVGFLIGPFLIIVAASFSAGDTLAFPPQGFSLKWIAKVFTVESFRES
FAMSMFLAIGGTFTALILGIPASYAMSRYKLPFAETVRTIVSAPIIVPGIIVGLALLRYF
VVPFGIGITLALFLAHTALILPYAVRVVSASLNNLRSDIEEAAVLLGSSRLGAFFRVVLP
NIRGGILSAFILGFVTSFNQVPVSLFLSGPGVRTLPIDMLGYMEIVFDPSVAALSSLLAF
LSIGIVFMAERFLGFSRYV