Protein Info for Atu4413 in Agrobacterium fabrum C58

Annotation: bacteriocin ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 transmembrane" amino acids 16 to 41 (26 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 146 to 176 (31 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 274 to 298 (25 residues), see Phobius details TIGR01842: type I secretion system ATPase" amino acids 21 to 561 (541 residues), 706.3 bits, see alignment E=1.3e-216 PF00664: ABC_membrane" amino acids 26 to 285 (260 residues), 59 bits, see alignment E=6.2e-20 PF00005: ABC_tran" amino acids 351 to 499 (149 residues), 94.8 bits, see alignment E=7e-31

Best Hits

Swiss-Prot: 56% identical to PRSD_RHIME: Type I secretion system ATP-binding protein PrsD (prsD) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K06148, ATP-binding cassette, subfamily C, bacterial (inferred from 100% identity to atu:Atu4413)

Predicted SEED Role

"Type I secretion system ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CUW2 at UniProt or InterPro

Protein Sequence (583 amino acids)

>Atu4413 bacteriocin ABC transporter ATPase (Agrobacterium fabrum C58)
MRFHSANNNVRRFKGVFSGCVTAFIGIGLMSALVNILYLTGSLFMMEVYDRVLPSRSLPT
LVALFAIAAVLYAFQGLFDAIRGRLLVRISDRLDQVLSTKVYDAVIGLQLRLPVSGRQAQ
PLRDLDTIRSFLSGSGPTALFDLPWLPFYIAICFAFHFWLGVTALAGAAILTVFTLMTEL
VSRRPVEEAAQHASRRNRLIEATRRNADIIAVMGMASPLRDRWQTDNRAYVREQRSASDI
ASGFGVASKVLRMLLQSGILAVGAWLVINEQATPGIIIAGSILSARALAPVDLAIANWKG
FIAARQSRYRLEKTLALLPDAAMRLDLPAPQALLSVERVNAIPPEATEPVLQDIAFTLAA
GSGLGVIGASGSGKSSLARLLVGLWRPVKGAIRLDGATLDQWPPEALARHIGYMPQMIEL
LDGTIAENIASFDRQASPEKIIAAARAARIHDLVVSLPDGYSTDVGETGRQLSAGQKQRI
ALARALYGDPFLVVLDEPNSNLDSEGEDALTAAILGIRERGGVAIVIAHRPSALLAMDKV
LMLADGRQQAFGAKEEVLAKVLRPVGGSAGALKVVQTTEPGKV