Protein Info for Atu4402 in Agrobacterium fabrum C58

Annotation: anion ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 72 to 96 (25 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 182 to 199 (18 residues), see Phobius details amino acids 229 to 250 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 85 to 257 (173 residues), 56.8 bits, see alignment E=1.3e-19

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to atu:Atu4402)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGK9 at UniProt or InterPro

Protein Sequence (269 amino acids)

>Atu4402 anion ABC transporter permease (Agrobacterium fabrum C58)
MNRILESLGWTGRYLWAGWAGLSGIFCFLAAWQAGHEIYGSFILPSPGETFAAIGLLAAR
PDFFAILSQSAVRALTGFAIAAGIGTVAGVLAGYSFAAMRLMKPVVTVLLGVPPIGWIVL
ALIWFGSSGGTAIMTVVIASAPVSFAGALEGVAKRDRQLEVMAQAFGAPWFYRLRTVTMP
HVLSYLFPAWTTTAGSAWKVTVMAELLSNSGGIGGELATARALFDIAQVSAWLTITVGLA
LLTDYGLLHLLREALERWRAAGLPWGVKR