Protein Info for Atu4401 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 102 to 114 (13 residues), see Phobius details PF12974: Phosphonate-bd" amino acids 69 to 238 (170 residues), 31.6 bits, see alignment E=1.7e-11 PF13379: NMT1_2" amino acids 72 to 267 (196 residues), 36.7 bits, see alignment E=6.5e-13 PF09084: NMT1" amino acids 114 to 264 (151 residues), 24.4 bits, see alignment E=3.8e-09

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 100% identity to atu:Atu4401)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGK8 at UniProt or InterPro

Protein Sequence (327 amino acids)

>Atu4401 hypothetical protein (Agrobacterium fabrum C58)
MTSYTRRRALSLLSGLTVASLAAPSILRAEAPFVFYGPPAAPSAVLAHAVKGGFLKDVAP
EAVFKAWKTPDEMRAAVASGSMGAVVMPSYGAANLHNRGLGLGLLNVLTTGLLYVVSKDE
TLTSLESLSGKTLALPFKNDMPDFVLRRLVAEKGLKPGDIKLEYAASPPEAVQLLLTGRV
DAALLSEPAATAVLIKAKSFFMTAHRTIDIQQDWAKVAGKPEIPQAGLALTSQVQEKLGK
AGIGALQAGVEAALASALADPQRAAAAAADALGFPAEIIAASFPTSHLSALKASAARADL
EAFYDELAKAHPAIIGGRRPDDGFYLV