Protein Info for Atu4337 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 545 to 563 (19 residues), see Phobius details PF05947: T6SS_TssF" amino acids 1 to 590 (590 residues), 686.9 bits, see alignment E=1.3e-210 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 593 (589 residues), 658 bits, see alignment E=9.1e-202

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 100% identity to atu:Atu4337)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGG3 at UniProt or InterPro

Protein Sequence (593 amino acids)

>Atu4337 hypothetical protein (Agrobacterium fabrum C58)
MADGFLEKYNDELFALRKRASRFAAAFPKIAGRLRMTGDVADDPHVERLIQSFAYSAARV
RQKLDDEFPELSDSLLETLYPHYLAPIPSMSVVQFAPSPALATVQTLARHSEILAEPVGG
ESCRFRTTQEVQIAPLQIAAATLAGQPIDAPFSASFAGTASCLRLSLRSTAPRGGTFPEM
GLTKLQVFLSAAWQQATALYELLTNHCVGMALARHSEDKEAIFLPAGNLRPSGFTRDQAM
LPYPANSFDGYRLLTEFFALPQKFLFLDIDGLHRWSGGDCELYIYLDAADAQLERMVSVK
DFVLNASPVINLFKQSCEPLSLDGTRTEYRLLPDARRQRTREIYAVEDVQLTSRSGQSEK
TSPFFGRTQRNNGANVFWQIQRRFDDDGSSDTDIAFVDEKRGPLGPLDVVASIDTLCINR
ELPSQLPFGGGHPFLQLSTGNEAVKSVHALMPPTAAIRVNERSAREWRLISHLLLNHLSL
TDSGGAPLKDILSLYSFRDSPETRQLVEAISKVEAQNSHARIGATMVPGTDITVEFDPAL
IARPAAFVFAGVLNHFFGLYTSINSFTRLTATMRGHSKPIARWPARAADRPLL