Protein Info for Atu4298 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 130 to 149 (20 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details amino acids 273 to 290 (18 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 336 to 355 (20 residues), see Phobius details amino acids 375 to 395 (21 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details amino acids 459 to 478 (20 residues), see Phobius details PF21088: MS_channel_1st" amino acids 434 to 475 (42 residues), 29.8 bits, see alignment 7e-11 PF00924: MS_channel_2nd" amino acids 477 to 541 (65 residues), 54.8 bits, see alignment E=1.2e-18 PF21082: MS_channel_3rd" amino acids 546 to 635 (90 residues), 24.8 bits, see alignment E=3.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4298)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGE1 at UniProt or InterPro

Protein Sequence (672 amino acids)

>Atu4298 hypothetical protein (Agrobacterium fabrum C58)
MKWLAALFVFLGTTPTLAQVPLPDVAQQDSSPETSASQKIDDLMRLFKDPEIRRWIEVQA
GQKTGTVASAETSSPETTSMGDVIREMATWEGHARDRFQTVISAVPDISSEIERVFLRLR
ADATGNGHTTASIFLSLLVALGIMAEWFFRRRWQQHGKGIEHYLPTVVFAAFMAASLFAI
QSPPLVRLVATFCLLAFVAYRLVATAIGHAAHPEVHGRLKIIVGLGLAMTVSTATGTILD
VDANALQAAAFLISCIMLGLSVELVWHSVNRSVATRSLLCLHLAAVWLLWRLDLRTAFWI
GLYILLLPPMMRAIGHAIRDYVAVHFVMPASDSRSVLLVRGARAAITGLAIAWIATVWDM
DGHMIGHGDPQTATLFYGFLKSIVILLLADLVWHLTKAAIDRNIMTAPAGSEAENPTEET
HATRLHTLLPILRNVLAVSLFIVAGLVILGQLGVDIGPLIAGAGIFGVAIGFGSQALVRD
VISGIFYLFDDAFRVGEYIQAKNYKGTVEGFSLRSVKLRHHRGPLFTVPFGELGAVENMS
RDWSKIKFSVTVPYDTDIEKARKIGKAIGQELLGDPELGRLFIQPLKMKGVEEFGEYGIA
ISFAMVTVPTSQQSFIRRSAYAMLREAFQKNGIAFAQPSIRVGGGKTPEATAAAYQSQLL
ARAGEQEDSTSL