Protein Info for Atu4293 in Agrobacterium fabrum C58

Annotation: monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 TIGR03571: luciferase-type oxidoreductase, BA3436 family" amino acids 19 to 328 (310 residues), 381.9 bits, see alignment E=1.1e-118 PF00296: Bac_luciferase" amino acids 47 to 274 (228 residues), 126.4 bits, see alignment E=8.1e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4293)

Predicted SEED Role

"Luciferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CUJ7 at UniProt or InterPro

Protein Sequence (341 amino acids)

>Atu4293 monooxygenase (Agrobacterium fabrum C58)
MSLSNTGHSSALDLIRKPAGGLTLGIELPLDNDWSPEREEQRVREGRPFGVPDLTRYPDL
IRQVDRSGFAAVWMRDVPVFDPNNFGDAGSVYDPFVNLGYLAGLTKNVALGTAAIVLPLR
HPMMVAKAAASVDRLSGGRLILGVASGDRPVEYPLLGLDFEGRGEAFRGAVSYLRAAGKA
GGLPLGDGRIEASLDLLPKPQQPQIPMIIAGQGQQSPEWIAANMEGRFVYPNGLERLAAQ
ARDWTAARKSLGLPRGAFVSAFHLDLADDPDERPAPRRFGARLGRNAFIDHLNALEDAGV
DHLALLLRPSRRPLDEVIDELSRDVLPVLNRQSSPAKTAAE