Protein Info for Atu4263 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 59% identical to YBHH_ECOLI: Putative isomerase YbhH (ybhH) from Escherichia coli (strain K12)

KEGG orthology group: K09788, hypothetical protein (inferred from 100% identity to atu:Atu4263)

MetaCyc: 51% identical to 4-oxalomesaconate tautomerase (Pseudomonas putida KT2440)
RXN-9983 [EC: 5.3.2.8]

Predicted SEED Role

"FIG00794837: hypothetical protein"

MetaCyc Pathways

gallate degradation II (3/5 steps found)
gallate degradation I (2/4 steps found)
methylgallate degradation (3/6 steps found)
protocatechuate degradation I (meta-cleavage pathway) (4/8 steps found)
superpathway of vanillin and vanillate degradation (5/10 steps found)
syringate degradation (4/12 steps found)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 5.3.2.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CGB9 at UniProt or InterPro

Protein Sequence (365 amino acids)

>Atu4263 hypothetical protein (Agrobacterium fabrum C58)
MRLLSMNDLLKIPCVLMRGGTSRGPFFLASDLPRDQAERDAALLSIMGSGHPLQIDGIGG
GNPVTSKVAIIGPSTVKGADIDYLFAQVRTDRQYVDYSPNCGNMLAAVGPFAIEAGLVEA
HGNDTIVRIHNVNTSKLIEAKVPTRGREVIYLGDASIDGVPGLAAPIALTFMDAAGAKTG
RLLPTGKAVDMIDGLEVTAIDCAIPMVLMRAADLGLTGYEDPQALTANSDLIERMTRIRI
QAGKLMGMGDVTDMVIPKPVLVAPARRGGTLSVRYFMPNECHPALATTGAVGIATAAVTE
GSVAYDLAGRLSVPTQISIEHPAGRLDVQLEMREGAITAGLVRTARRLFEGFAFAKPTAA
IEDAA