Protein Info for Atu4178 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 648 transmembrane" amino acids 32 to 57 (26 residues), see Phobius details PF01551: Peptidase_M23" amino acids 509 to 605 (97 residues), 105.5 bits, see alignment E=1.4e-34

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4178)

Predicted SEED Role

"Peptidase, M23/M37 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CG71 at UniProt or InterPro

Protein Sequence (648 amino acids)

>Atu4178 hypothetical protein (Agrobacterium fabrum C58)
MTADRNVIRSLGTEPPILAEGRRAPDRREISLRWLSGTFLTGITSSILMGVALFAALDGR
QQLAIPAEAFAKADMGNNATEAARRGTRLVAPNIAARPSDRSIMEVSTVINEGDKEVVRK
VPFSHVKIPLASNYAKQDDYPAFDPLNIFASNDDKDAPAPAASRTGTIYGSEVESEVSLK
TVAFPVQHSKYAFAGSLSFDEVEEAVRSNGSILTDGNEQVAALYYIDPRRFDNDEGDVDI
TAGLAARVVEQNMSVSTPQSSSVPVKEYADDVIPSRQTETIEAALFGAGYSKAQSSEIAK
LLSPQIQSENVESGDVLRVGIIQEDEKSDIVRVSLYRKGRHMVTMAIDDHKNFVKASEPP
KLDAVATAFDSTPAPAAGRDLPSVYDGVYRAALAYGMNQSMVSQLIKLLASSVDFQAQLK
PTDTLEAFFSVEDADGKATDKSELLYVNAKFGDNETRFYRFQSPEDNSVDYFDENGKSIR
QFLLRNPVPNGRMTSGFGMRRHPVLKFSRMHTGTDWAAARGTPIIATGNGTVEKAGWASG
YGNQTLIRHANGYVSSYNHQSAIAKGVTEGSKVRQGQVIGYVGSTGLSTGAHLHYELIVN
GTKVDAMKVRLPGGKSLSGVALARFSDERKRIDNLLNIDEKPNQVASR