Protein Info for Atu4132 in Agrobacterium fabrum C58

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF14525: AraC_binding_2" amino acids 36 to 200 (165 residues), 50.9 bits, see alignment E=2.4e-17 PF12833: HTH_18" amino acids 242 to 317 (76 residues), 60.3 bits, see alignment E=2.7e-20 PF00165: HTH_AraC" amino acids 281 to 318 (38 residues), 45.1 bits, see alignment 1.2e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4132)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CU51 at UniProt or InterPro

Protein Sequence (347 amino acids)

>Atu4132 AraC family transcriptional regulator (Agrobacterium fabrum C58)
MMNTGSFEAPLARSRFDTRHVPKRDAMGLWRDSINVLFDARLRSSQDDGFFASVDAAFIG
NVALGRTQSSAQDFDRSRNKLARDGMDGFLLQFYASGKSMSRRGTGETAGPGDLYIIDMA
QPLATATTDHDHLSLVVPRRLLEGRLIGSGNHHERVLPAGLPLVSLLRETMTSIYRHFDV
MNANDGAATVSPLLELATAAINNHVREDNAQGVQRALRASIRRYIDNHLLDPALSVEKVM
GEFGVSRRTVYRLFEPLGGFSACITHRRLERAMDFLRAPQSSHMTIADVAAAYGFTNPEN
FSRVFKKTFGLSPRQIRHFASENRDVTSEILKPDSAEWMRWIVQLGR