Protein Info for Atu4056 in Agrobacterium fabrum C58

Annotation: succinoglycan biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 196 to 212 (17 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details amino acids 286 to 305 (20 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 10 to 328 (319 residues), 145.9 bits, see alignment E=7.6e-47

Best Hits

Swiss-Prot: 56% identical to EXOH_RHIME: Succinoglycan biosynthesis protein ExoH (exoH) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to atu:Atu4056)

MetaCyc: 56% identical to succinyltransferase ExoH (Sinorhizobium meliloti 1021)
RXN-21329

Predicted SEED Role

"STRUCTURAL ELEMENTS; Cell Exterior; surface polysaccharides/antigens"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7CTZ0 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Atu4056 succinoglycan biosynthesis protein (Agrobacterium fabrum C58)
MTVDQNLSSRINLMRILLISGIVFVHVPHDAETSPFLGLYGFFDWLRVFLGDALFRIGVP
CLSAISGYLLFRRGMSGFDYPATIRSKSKTVLLPFLLWNGALFAVVLLVQLFDVGVGYFP
DLWNASPREIISHGTALEELPVNVPLYFLRDLFVCILLSPVLAFLMRRFALPTLAILLII
TAMPDLTIFIVQKKSILFSFSLGIALALHRVDVKALDPYALPIMALTFAASAMLATGLYF
TGPEFTFWLNMSRNLLAVFGALGFWVSSSILIRSRLGQRLADTGSLSFWIFCAHYPLLVI
MWMVWNKGGPDFYPAFYISATLSAFVILVISNAQTRKYLPAIYGVLTGSRNGKRRTKADV
ANKRNSIIGPPTSETLYSQRQR