Protein Info for Atu4051 in Agrobacterium fabrum C58

Annotation: succinoglycan biosynthesis glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF13641: Glyco_tranf_2_3" amino acids 8 to 208 (201 residues), 57.4 bits, see alignment E=3.3e-19 PF10111: Glyco_tranf_2_2" amino acids 11 to 111 (101 residues), 30.2 bits, see alignment E=5.1e-11 PF00535: Glycos_transf_2" amino acids 11 to 177 (167 residues), 116.8 bits, see alignment E=1.5e-37

Best Hits

Swiss-Prot: 61% identical to EXOO_RHIME: Succinoglycan biosynthesis protein ExoO (exoO) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 100% identity to atu:Atu4051)

MetaCyc: 61% identical to glucosyltransferase ExoO (Sinorhizobium meliloti 1021)
2.4.1.-

Predicted SEED Role

"Beta-1,3-glucosyltransferase" in subsystem LOS core oligosaccharide biosynthesis

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CG01 at UniProt or InterPro

Protein Sequence (326 amino acids)

>Atu4051 succinoglycan biosynthesis glycosyltransferase (Agrobacterium fabrum C58)
MENLASPPDISFVIAAYNAADTIEAAVQSALDQRGVTLEVIVVDDRSADDTITFVEAIAA
IDPRVRLLALEENRGPGGARNAGIEAATGRWIAVLDSDDVIRPERSACMMCRAEAANAAV
AVDNLDVVYTDGRPMETMFPEEFLEERAVLTLEDFISSNILFRSTFNFGYMKPMFRRDFL
NNEGLRFREDIRIGEDYILLASALAAGGLCVIEPKPGYIYNIREGSISRVLELHHVEAMM
RADQEFLSHYTLLPAAMDAQQARARSLQLAHNFLTLVENIKRRSVLGALKTTIRDPAVLG
HLRMPIAVRLRRLRDAMFAPAAKIQG