Protein Info for Atu4049 in Agrobacterium fabrum C58

Annotation: exopolysaccharide polymerization/transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 transmembrane" amino acids 52 to 73 (22 residues), see Phobius details amino acids 472 to 492 (21 residues), see Phobius details TIGR01005: exopolysaccharide transport protein family" amino acids 35 to 796 (762 residues), 699.5 bits, see alignment E=5.3e-214 PF02706: Wzz" amino acids 38 to 127 (90 residues), 49.5 bits, see alignment E=8.8e-17 PF13807: GNVR" amino acids 427 to 490 (64 residues), 36.1 bits, see alignment E=1e-12 TIGR01007: capsular exopolysaccharide family" amino acids 577 to 765 (189 residues), 110.6 bits, see alignment E=7.4e-36 PF10609: ParA" amino acids 588 to 761 (174 residues), 32.6 bits, see alignment E=1.1e-11 PF13614: AAA_31" amino acids 599 to 718 (120 residues), 30.6 bits, see alignment E=6.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu4049)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFZ9 at UniProt or InterPro

Protein Sequence (797 amino acids)

>Atu4049 exopolysaccharide polymerization/transport protein (Agrobacterium fabrum C58)
MLGFPRTIFNSQGRSMHHKTFKSNIGFPESGKDSDTFIDLDRLWAAVVRRANVIAASVIA
AVVLAGLYLVLATPVYTAMTQVLLDESLSRYAEEESPVPAAQIVDNRIASAVEILKSKEM
ALTVVDKAKLDENDTIVNPPMSPVELVKSSVRGILDLVLPGDPPVSEAAIRAGRREKAAA
MLQQSLAVERVGRSSVIAISTRSTDRQLAAQIAKTYAQAYLTEQLNANFDASERASVWLQ
ERMTDLNQRAQAAELAVQKFRSDNNIVSSRGELMSESQLADLNGQLIAAQADAATASARY
SQYKSIIDRGPETAVDNAVVSARDTDNSVIQDLRKRYITISDRQRGIVQQFGADHPQATA
LDAEKKELSQQIFQELQQLTGSFKNEFDVANSRVQSLRDNIDKVAGRNSEANITMVQLRE
LEQRATALRTLYQSYLGRFEEASQKQSLPIAKARIISEAGLPTSPSSPKKTMTMALSVIL
GLMLGGGIAALLEFRDRFFHTGNDVRDNLRMRFLGYLPFIGERGVENAKAGTSAATPGGE
NATLDESGQVSFQKMLRLAVDSPRSSFAETLRNVKLTADVVIQERQCRVIGVISCLPNEG
KSVVALNLAGLIASTGKRTLVVDADIRNPGLSRMLTTRQSAGLVEVVLDEVPWTQAVKVD
TRTKMGILPVSTSNQFAHSSELLSSSGMRKFIDSAREACDYIIVDLAPVVPVIDAKAFAP
QVDGFVFVTEWGKTPIQMVQNLMANEPQIANKTLGIVLNKTDMTELQRYAGPGGSEHYHE
KFSAYYGDAKPPVKEDA