Protein Info for Atu4043 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 PF01494: FAD_binding_3" amino acids 52 to 84 (33 residues), 26.8 bits, see alignment (E = 1.3e-09) PF03486: HI0933_like" amino acids 52 to 441 (390 residues), 231.2 bits, see alignment E=5.4e-72 PF00070: Pyr_redox" amino acids 53 to 87 (35 residues), 25.7 bits, see alignment 5.2e-09 TIGR00275: flavoprotein, HI0933 family" amino acids 53 to 441 (389 residues), 282.3 bits, see alignment E=5.8e-88 PF13450: NAD_binding_8" amino acids 55 to 83 (29 residues), 24 bits, see alignment (E = 1.6e-08) TIGR03862: flavoprotein, TIGR03862 family" amino acids 74 to 448 (375 residues), 512.9 bits, see alignment E=4.4e-158 PF22780: HI0933_like_1st" amino acids 238 to 389 (152 residues), 72 bits, see alignment E=2.1e-23

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 100% identity to atu:Atu4043)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFZ7 at UniProt or InterPro

Protein Sequence (451 amino acids)

>Atu4043 hypothetical protein (Agrobacterium fabrum C58)
MKRLFLISCEKVTGRSSVNIRVQYRIYSHPEIGIRLSMAKMAKERVLSEARQVAIIGGGP
AGLMAAEMLSAAGHAVTVFEAMPTVARKLLMAGKSGLNITHAEDYDSFRHRFGEAEPRLR
AALDNFTPEMLRDWAERLGQETFVGTSGRVFPRVMKASPLLRAWLARLEAQGVTIQTRHR
WTGFSGDRLVFATPGGEVTIKADAALLALGGASWPRLGSDAAWVPVLAQKGVEVSPFRPA
NCGFDVDWSDIFRERFAGEAVKSTVTISPAGAFQGEFVITKHGIEGSVIYAHSAALRDRL
EQAGGAALAVDLAPGRTVERLCRDLEKLGRKESFANRMRKAAGLSAVKVGLLREIFPDIA
AMPDGFVAARLKHLEIPLLRPRPIAEAISAAGGVAWSGVDENYMLESIPGIFVAGEMLDW
EAPTGGYLLTACFATGKAAAKGLAGWLESSA