Protein Info for Atu4024 in Agrobacterium fabrum C58

Annotation: iron-hydroxamate transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 654 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 48 to 76 (29 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 220 to 266 (47 residues), see Phobius details amino acids 274 to 297 (24 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 346 to 365 (20 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details amino acids 419 to 438 (20 residues), see Phobius details amino acids 444 to 466 (23 residues), see Phobius details amino acids 475 to 497 (23 residues), see Phobius details amino acids 517 to 540 (24 residues), see Phobius details amino acids 553 to 572 (20 residues), see Phobius details amino acids 576 to 597 (22 residues), see Phobius details amino acids 606 to 626 (21 residues), see Phobius details amino acids 632 to 651 (20 residues), see Phobius details PF01032: FecCD" amino acids 15 to 322 (308 residues), 220.3 bits, see alignment E=1.7e-69 amino acids 354 to 651 (298 residues), 245 bits, see alignment E=5e-77

Best Hits

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 100% identity to atu:Atu4024)

Predicted SEED Role

"Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB" in subsystem Iron acquisition in Vibrio or Siderophore Aerobactin (TC 3.A.1.14.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CFY7 at UniProt or InterPro

Protein Sequence (654 amino acids)

>Atu4024 iron-hydroxamate transporter permease subunit (Agrobacterium fabrum C58)
MTARPLQFFFGLLFLFACGLSLHAGLQRLPLGAWPGLPFDAASMSMDQIIFAFSLLPRVA
VAILAGAMLGLSGALFQQLLRNPIADPSTLGISAGAQLAIVIATLFFPSVLDGNRALVAL
AGAAAAAGVVFLLGWRRSFEPVTMVVSGLLVGITAASVSAALTLAQGEYLMSLVVWNGGS
LSQQDWSNAVMLAFQLLAGLALTGLLIRPLTVLGLGDSGARSLGVSLFSIRLAVAAVAVM
LAAFVASAVGLVSFIGLAAPALTRALGVRRSSSVLLVSPLLGGLLLWFCDGLVQLLASTT
AEVFPTGAVTALIGGPLLLWLLPKIRPTDVHRGEGVDLAPRRGPSALLPVLVIMAVLVFA
ALVIGKGPDGWTMLKASDLQTLLPFRWPRLVAAIAAGGLLAMAGALLQRLTGNPMASPEV
IGVSGGAGLGFAAAITIFPAAGLFELFCGAGIGSAAVMILVLFFAVRRHLAPEKILLAGI
AVSSLCSAVLSALLAIGDQRAWQILAWLSGSGSTATPASAIFLSILSVVLLVAALSVTRW
LTILPLGRDVPLSLGLPLSAARIAVIAVAGIATGAASLLVGPLSFVGLMAPHIALRAGFT
TPRDHLLASFLFGAVLMALSDLGARTVTFPYELPLGLFAALAGAPYLIWLSGRR